Summary: The puzzle transforms input given to it in 7 stages.
Solvers must deduce these rules; find the only input that gets through all 7 stages successfully, viz. "33"; and apply the transformations to 33 itself to get the answer, DARN.
A detailed solution/walkthrough follows. (Note that intermediate "ok" messages from the output are elided for brevity.)
Type stuff into the box.
Digit or uppercase letter? Let's try it.
Well, at least a single digit gets through to stage 2, and causes an error if it's not prime.
Unfortunately, multiple-digit numbers don't; if you enter "10", Stage 2 only complains about the number 1. Weird.
What about letters?
At least from the letters that cause an "Error in stage 2", it appears that A becomes 10, B becomes 11 and so on. They don't overlap with the digits at all; it makes sense. In fact, these are the standard base-36 digits, which will be helpful for verification at the end.
Why do the numbers have to be prime? Can we input more than one letter or number?
Yeah, at least it got through to stage 2. Let's try a letter we know is a prime.
Out of range? That sucks. But at least we now are pretty sure that stage 2 multiplies the primes together, since B = 11. Now we can try getting different numbers past stage 2, as long as their prime factors are all at most 35. What about 120 or 119?
We can't express 118 because it has 59 as a prime factor, but 117:
gets through. Interesting. (Obviously, we just happened to start at 121, right next to the upper bound, but the knowledge that it's a range should allow the solver to find the bound through binary search quickly.)
With more experimentation, one can figure out that the numbers you can get through stage 2 that are below 117 all get through stage 3 as well. This, combined with some inspiration from a source such as looking up 117 on Wikipedia and seeing ununseptium or having one's local Course 5 major available, makes it reasonable to guess that these numbers are being used as atomic numbers of elements. (It is also evidently possible to backsolve this step after guessing stage 4 and thinking that 29 corresponds to a word ??PP??.)
Continuing the tests:
One can verify that the last letter of element 3, lithium, is indeed 'm'. The error also says something about "unpaired letters"...
This message, when coupled with more experimenting, should allow one to discover that the elements that get through stage 4 are those with even-length names. So letters are paired up and something is done with them. What could it be?
Getting further probably requires you to test all the atomic numbers that are achievable. You should eventually find:
29, copper
30, zinc
42, molybdenum
91, protactinium
110, darmstadtium
This stage is quite hard because these are the only five stage 5 error messages you can get. But you can guess that 8 is a magic number and that the magic formula is f(x) = 8 − floor(tan(x)).
If you make the correct leap that adjacent letters in the chemical name are paired, then the position will tell you the relevant letter pair, which improves the information you have considerably.
29: co[pp]er
30: [zi]nc
42: mo[ly]bdenum
91: pr[ot]actinium
110: da[rm]stadtium
If you are a crazy-dedicated puzzlehunter who has memorized the A=1, B=2 correspondence, you will quickly be able to notice:
29: (P = 16) × (P = 16) = 256
30: (Z = 26) × (I = 9) = 234
42: (L = 12) × (Y = 25) = 300
91: (O = 15) × (T = 20) = 300
110: (R = 18) × (M = 13) = 234
The fact that there are two pairs of equal products from different letters among these is entirely an evil coincidence.
Okay! The hard part of the puzzle should be over. There are plenty of stage 6 failures to look at, and applying the magic formula from stage 5 should make the pattern easy to spot.
2: [he][li][um]
[he] = 8 × 5 = 40; 8 − floor(tan(40)) = 10
7: [ni][tr][og][en]
[ni] = 14 × 9 = 126; 8 − floor(tan(126)) = 8
So 10 becomes 110 and 8 becomes 18. It seems that stage 6 is prepending the digit 1 to the result of each pair, and requires the result of prepending 1 to always be a prime. So we get another a list of primes? This should remind you of stage 2 and lead you to guess that the resulting primes are multiplied together.
What's the last step?
6: [ca][rb][on]
We're guessing that the input is a bunch of primes, which will probably get multiplied together, and the output is base-36. Let's check our "primes get multiplied together" hypothesis.
6: [ca][rb][on]
[ca] = 3 × 1 = 3; 8 − floor(tan(3)) = 9
[rb] = 18 × 2 = 36; 8 − floor(tan(36)) = 1
[on] = 15 × 14 = 210; 8 − floor(tan(210)) = 9
19 × 11 × 19 = 3971
3971 in base 36: 32B. (Stage 1 should make the solver confident that numbers and letters are to be used for base 36.)
Other inputs that can be used to verify this hypothesis:
Looks good! Now let's figure out the answer! You should have stumbled upon the "Success!" message very early while experimenting, but you have to figure out what every stage does to be able to extract the answer from it:
9: [fl][uo][ri][ne]
[fl] = 6 × 12 = 72; 8 − floor(tan(72)) = 9
[uo] = 21 × 15 = 315; 8 − floor(tan(315)) = 7
[ri] = 18 × 9 = 162; 8 − floor(tan(162)) = 13
[ne] = 14 × 5 = 70; 8 − floor(tan(70)) = 7
19 × 17 × 113 × 17 = 620483
620483 in base 36: DARN, which is the answer.